refdb_par1=0
refdb_par2=all
tRNAscan_par0=
tRNAscan_par1=
tRNAscan_par2=
tRNAscan_par3=
tRNAscan_par4=
codontable_par1=
aragorn_par1=
misa_par1= 1-10 2-6 3-5 4-5 5-5 6-5 
trf_par1= 2 7 7 80 10 50 500 -f -d -m 
vmatch_par1= -f -p -h 3 -l 30